Micromonospora orduensis sp. nov., isolated from deep marine sediment

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dc.authoridVeyisoglu, Aysel/0000-0002-1406-5513
dc.authoridIgual, Jose M./0000-0002-5080-0378
dc.authoridCarro, Lorena/0000-0001-8833-642X
dc.authoridCetin, Demet/0000-0003-1186-4229
dc.authoridSahin, Nevzat/0000-0002-6026-656X
dc.contributor.authorVeyisoglu, Aysel
dc.contributor.authorCarro, Lorena
dc.contributor.authorCetin, Demet
dc.contributor.authorIgual, Jose M.
dc.contributor.authorKlenk, Hans-Peter
dc.contributor.authorSahin, Nevzat
dc.date.accessioned2025-03-23T19:44:30Z
dc.date.available2025-03-23T19:44:30Z
dc.date.issued2020
dc.departmentSinop Üniversitesi
dc.description.abstractA novel actinobacterial strain, designated S2509(T), was isolated from marine sediment collected by a dredge at a depth of 45 m along Melet River offshore of the southern Black Sea coast, Ordu, Turkey. The cell wall peptidoglycan of strain was found to contain meso-diaminopimelic acid and 3-OH-diaminopimelic acid. The whole cell sugars detected were arabinose, glucose, rhamnose, ribose and xylose. The diagnostic phospholipids of strain S2509(T) were found to be diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, a glycolipid and two unidentified phospholipids. The predominant menaquinones were identified as MK-9(H-8), MK-9(H-6), MK-10(H-8), MK-9(H-4), MK-10(H-4) and MK-10(H-6). The major cellular fatty acids were found to be iso-C-16:0, iso-C-15:0 and 10-methyl C-17:0. The taxonomic position of the strain was established using a polyphasic approach, showing that S2509(T) strain belongs to the genus Micromonospora. Phylogenetic analysis based on the 16S rRNA gene sequence of strain S2509(T) showed that it is closely related to the type strain of Micromonospora chokoriensis DSM 45160(T) (99.37% sequence similarity), and phylogenetically clustered with Micromonospora inaquosa LB39(T) (99.37%), Micromonospora lupini Lupac 14N(T) (99.16%), Micromonospora violae NEAU-zh8(T) (99.23%) and Micromonospora taraxaci NEAU-P5(T) (99.03%). The phylogenetic analysis based on the gyrB gene sequence of strain S2509(T) confirmed its close relationship with M. chokoriensis JCM 13247(T) (96.5% sequence similarity). Whole genome sequences confirmed by digital DNA-DNA hybridization analysis that the strain S2509(T) represents a novel species in the genus Micromonospora, for which the name Micromonospora orduensis sp. nov. is proposed. The type strain is S2509(T) (=DSM 45926(T) = KCTC 29201(T)).
dc.description.sponsorshipOndokuz Mayis University [PYO. FEN. 1901.12.014]; School of Biology (Newcastle University); University of Salamanca; BBSRC [BB/L024209]
dc.description.sponsorshipAV is gratefully acknowledge support from Ondokuz Mayis University (Project No. PYO. FEN. 1901.12.014) and the School of Biology (Newcastle University). LC thanks the University of Salamanca for a postdoctoral fellowship. Genome sequencing was provided by MicrobesNG (http://www.microbesng.uk), which is supported by the BBSRC (Grant Number BB/L024209).
dc.identifier.doi10.1007/s10482-019-01349-6
dc.identifier.endpage405
dc.identifier.issn0003-6072
dc.identifier.issn1572-9699
dc.identifier.issue3
dc.identifier.pmid31630299
dc.identifier.scopus2-s2.0-85074789024
dc.identifier.scopusqualityQ2
dc.identifier.startpage397
dc.identifier.urihttps://doi.org/10.1007/s10482-019-01349-6
dc.identifier.urihttps://hdl.handle.net/11486/6953
dc.identifier.volume113
dc.identifier.wosWOS:000491524500003
dc.identifier.wosqualityQ4
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherSpringer
dc.relation.ispartofAntonie Van Leeuwenhoek International Journal of General and Molecular Microbiology
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_WOS_20250323
dc.subjectMicromonospora
dc.subjectPolyphasic taxonomy
dc.subjectMarine sediment
dc.subject16S rRNA gene
dc.subjectgyrB gene
dc.titleMicromonospora orduensis sp. nov., isolated from deep marine sediment
dc.typeArticle

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